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1

Insights into eukaryotic DNA priming from the structure and functional interactions of the 4Fe-4S cluster domain of human DNA primase

Sivaraja Vaithiyalingam, Eric M. Warren, Brandt F. Eichman, Walter J. Chazin and Bruce Stillman

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.47 MB

english, 2010

2

10.1038/78985

Ho, P. Shing, Vargason, Jeffrey M., Eichman, Brandt F.

Journal:

Natural Structural Biology

Year:

2000

Language:

english

File:

PDF, 597 KB

english, 2000

3

An unprecedented nucleic acid capture mechanism for excision of DNA damage

Rubinson, Emily H., Gowda, A. S. Prakasha, Spratt, Thomas E., Gold, Barry, Eichman, Brandt F.

Journal:

Year:

2010

Language:

english

File:

PDF, 956 KB

english, 2010

4

Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase

Brieba, Luis G, Eichman, Brandt F, Kokoska, Robert J, Doublié, Sylvie, Kunkel, Tom A, Ellenberger, Tom

Journal:

The EMBO Journal

Year:

2004

Language:

english

File:

PDF, 374 KB

english, 2004

5

DNA damage recognition and repair by 3-methyladenine DNA glycosylase I (TAG)

Metz, Audrey H, Hollis, Thomas, Eichman, Brandt F

Journal:

The EMBO Journal

Year:

2007

Language:

english

File:

PDF, 453 KB

english, 2007

6

Nucleic acid recognition by tandem helical repeats

Emily H Rubinson, Brandt F Eichman

Journal:

Current Opinion in Structural Biology

Year:

2012

Language:

english

File:

PDF, 2.94 MB

english, 2012

7

Structural Basis for DNA Binding by Replication Initiator Mcm10

Eric M. Warren, Sivaraja Vaithiyalingam, Justin Haworth, Briana Greer, Anja-Katrin Bielinsky, Walter J. Chazin, Brandt F. Eichman

Journal:

Year:

2008

Language:

english

File:

PDF, 1.82 MB

english, 2008

8

The crystal structures of DNA Holliday junctions

P.Shing Ho, Brandt F Eichman

Journal:

Current Opinion in Structural Biology

Year:

2001

Language:

english

File:

PDF, 133 KB

english, 2001

9

The structures and relative stabilities of d(G · G) reverse hoogsteen, d(G·T) reverse wobble, and d(G · C) reverse watson-crick base-pairs in DNA crystals

Blaine H.M Mooers, Brandt F Eichman, P.Shing Ho

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 403 KB

english, 1997

10

The crystal structures of psoralen cross-linked DNAs: drug-dependent formation of Holliday junctions

Brandt F Eichman, Blaine H.M Mooers, Marie Alberti, John E Hearst, P.Shing Ho

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 1.17 MB

english, 2001

11

The Power of Pumping Together: Deconstructing the Engine of a DNA Replication Machine

Brandt F. Eichman, Ellen Fanning

Journal:

Year:

2004

Language:

english

File:

PDF, 40 KB

english, 2004

12

A New Protein Architecture for Processing Alkylation Damaged DNA: The Crystal Structure of DNA Glycosylase AlkD

Emily H. Rubinson, Audrey H. Metz, Jami O'Quin, Brandt F. Eichman

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 1.66 MB

english, 2008

13

Unraveling a Connection between DNA Demethylation Repair and Cancer

Manel Camps, Brandt F. Eichman

Journal:

Year:

2011

Language:

english

File:

PDF, 107 KB

english, 2011

14

The Inherent Properties of DNA Four-way Junctions: Comparing the Crystal Structures of Holliday Junctions

Brandt F. Eichman, Miguel Ortiz-Lombardı́a, Joan Aymamı́, Miquel Coll, Pui Shing Ho

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 1.03 MB

english, 2002

15

Recent advances in the structural mechanisms of DNA glycosylases

Sonja C. Brooks, Suraj Adhikary, Emily H. Rubinson, Brandt F. Eichman

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2013

Language:

english

File:

PDF, 3.54 MB

english, 2013

16

Depurination of N7-Methylguanine by DNA Glycosylase AlkD Is Dependent on the DNA Backbone

Rubinson, Emily H., Christov, Plamen P., Eichman, Brandt F.

Journal:

Year:

2013

Language:

english

File:

PDF, 1003 KB

english, 2013

17

Insights into Eukaryotic Primer Synthesis from Structures of the p48 Subunit of Human DNA Primase

Vaithiyalingam, Sivaraja, Arnett, Diana R., Aggarwal, Amit, Eichman, Brandt F., Fanning, Ellen, Chazin, Walter J.

Journal:

Journal of Molecular Biology

Year:

2014

Language:

english

File:

PDF, 491 KB

english, 2014

18

Substrate-Selective Repair and Restart of Replication Forks by DNA Translocases

Bétous, Rémy, Couch, Frank B., Mason, Aaron C., Eichman, Brandt F., Manosas, Maria, Cortez, David

Journal:

Year:

2013

Language:

english

File:

PDF, 2.54 MB

english, 2013

19

Interplay between base excision repair activity and toxicity of 3-methyladenine DNA glycosylases in an E. coli complementation system

Troll, Christopher J., Adhikary, Suraj, Cueff, Marie, Mitra, Ileena, Eichman, Brandt F., Camps, Manel

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2014

Language:

english

File:

PDF, 2.17 MB

english, 2014

20

Excision of 5-hydroxymethylcytosine by DEMETER family DNA glycosylases

Jang, Hosung, Shin, Hosub, Eichman, Brandt F., Huh, Jin Hoe

Journal:

Biochemical and Biophysical Research Communications

Year:

2014

Language:

english

File:

PDF, 908 KB

english, 2014

21

An HPLC–tandem mass spectrometry method for simultaneous detection of alkylated base excision repair products

Mullins, Elwood A., Rubinson, Emily H., Pereira, Kevin N., Calcutt, M. Wade, Christov, Plamen P., Eichman, Brandt F.

Journal:

Year:

2013

Language:

english

File:

PDF, 570 KB

english, 2013

22

The substrate binding interface of alkylpurine DNA glycosylase AlkD

Mullins, Elwood A., Rubinson, Emily H., Eichman, Brandt F.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.52 MB

english, 2014

23

Non-productive DNA damage binding by DNA glycosylase-like protein Mag2 from Schizosaccharomyces pombe

Adhikary, Suraj, Cato, Marilyn C., McGary, Kriston L., Rokas, Antonis, Eichman, Brandt F.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.55 MB

english, 2013

24

5-Methylcytosine Recognition by Arabidopsis thaliana DNA Glycosylases DEMETER and DML3

Brooks, Sonja C., Fischer, Robert L., Huh, Jin Hoe, Eichman, Brandt F.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.80 MB

english, 2014

25

Structural Analysis of Replication Protein A Recruitment of the DNA Damage Response Protein SMARCAL1

Feldkamp, Michael D., Mason, Aaron C., Eichman, Brandt F., Chazin, Walter J.

Journal:

Year:

2014

Language:

english

File:

PDF, 4.90 MB

english, 2014

26

Differential Stabilities and Sequence-Dependent Base Pair Opening Dynamics of Watson–Crick Base Pairs with 5-Hydroxymethylcytosine, 5-Formylcytosine, or 5-Carboxylcytosine

Szulik, Marta W., Pallan, Pradeep S., Nocek, Boguslaw, Voehler, Markus, Banerjee, Surajit, Brooks, Sonja, Joachimiak, Andrzej, Egli, Martin, Eichman, Brandt F., Stone, Michael P.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.89 MB

english, 2015

27

Correction to Differential Stabilities and Sequence-Dependent Base Pair Opening Dynamics of Watson–Crick Base Pairs with 5-Hydroxymethylcytosine, 5-Formylcytosine, or 5-Carboxylcytosine

Szulik, Marta W., Pallan, Pradeep S., Nocek, Boguslaw, Voehler, Markus, Banerjee, Surajit, Brooks, Sonja, Joachimiak, Andrzej, Egli, Martin, Eichman, Brandt F., Stone, Michael P.

Journal:

Year:

2015

Language:

english

File:

PDF, 145 KB

english, 2015

28

HLTF’s Ancient HIRAN Domain Binds 3′ DNA Ends to Drive Replication Fork Reversal

Kile, Andrew C., Chavez, Diana A., Bacal, Julien, Eldirany, Sherif, Korzhnev, Dmitry M., Bezsonova, Irina, Eichman, Brandt F., Cimprich, Karlene A.

Journal:

Year:

2015

Language:

english

File:

PDF, 3.26 MB

english, 2015

29

The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions

Mullins, Elwood A., Shi, Rongxin, Parsons, Zachary D., Yuen, Philip K., David, Sheila S., Igarashi, Yasuhiro, Eichman, Brandt F.

Journal:

Year:

2015

Language:

english

File:

PDF, 6.76 MB

english, 2015

30

Domain structure of the DEMETER 5-methylcytosine DNA glycosylase

Young Geun Mok, Rie Uzawa, Jiyoon Lee, Gregory M. Weiner, Brandt F. Eichman, Robert L. Fischer and Jin Hoe Huh

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.46 MB

english, 2010

31

Identification of a Substrate Recognition Domain in the Replication Stress Response Protein Zinc Finger Ran-binding Domain Containing Protein 3 (ZRANB3)

Badu-Nkansah, Akosua, Mason, Aaron C., Eichman, Brandt F., Cortez, David

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 7.01 MB

english, 2016

32

Analysis of substrate specificity of Schizosaccharomyces pombe Mag1 alkylpurine DNA glycosylase

Adhikary, Suraj, Eichman, Brandt F

Journal:

Year:

2011

Language:

english

File:

PDF, 936 KB

english, 2011

33

A Catalytic Role for C–H/π Interactions in Base Excision Repair by Bacillus cereus DNA Glycosylase AlkD

Parsons, Zachary D., Bland, Joshua M., Mullins, Elwood A., Eichman, Brandt F.

Journal:

Journal of the American Chemical Society

Year:

2016

Language:

english

File:

PDF, 1.37 MB

english, 2016

34

Structure of a DNA glycosylase that unhooks interstrand cross-links

Mullins, Elwood A., Warren, Garrett M., Bradley, Noah P., Eichman, Brandt F.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.81 MB

english, 2017

35

[Methods in Enzymology] DNA Repair Enzymes: Structure, Biophysics, and Mechanism Volume 592 || Preface

Eichman, Brandt F.

Year:

2017

Language:

english

File:

PDF, 35 KB

english, 2017

36

Toxicity and repair of DNA adducts produced by the natural product yatakemycin

Mullins, Elwood A, Shi, Rongxin, Eichman, Brandt F

Journal:

Nature Chemical Biology

Year:

2017

Language:

english

File:

PDF, 4.56 MB

english, 2017

37

Selective base excision repair of DNA damage by the non‐base‐flipping DNA glycosylase AlkC

Shi, Rongxin, Mullins, Elwood A, Shen, Xing‐Xing, Lay, Kori T, Yuen, Philip K, David, Sheila S, Rokas, Antonis, Eichman, Brandt F

Journal:

The EMBO Journal

Year:

2017

Language:

english

File:

PDF, 1.92 MB

english, 2017

38

A New Family of HEAT-Like Repeat Proteins Lacking a Critical Substrate Recognition Motif Present in Related DNA Glycosylases

Mullins, Elwood A., Shi, Rongxin, Kotsch, Lyle A., Eichman, Brandt F., Volkert, Michael R

Journal:

Year:

2015

Language:

english

File:

PDF, 3.65 MB

english, 2015

39

Structural Biology of the HEAT-Like Repeat Family of DNA Glycosylases

Shi, Rongxin, Shen, Xing-Xing, Rokas, Antonis, Eichman, Brandt F.

Journal:

Year:

2018

Language:

english

File:

PDF, 5.21 MB

english, 2018

40

Movement of the RecG Motor Domain upon DNA Binding Is Required for Efficient Fork Reversal

Warren, Garrett, Stein, Richard, Mchaourab, Hassane, Eichman, Brandt

Journal:

International Journal of Molecular Sciences

Year:

2018

Language:

english

File:

PDF, 3.46 MB

english, 2018

41

HMCES Maintains Genome Integrity by Shielding Abasic Sites in Single-Strand DNA

Mohni, Kareem N., Wessel, Sarah R., Zhao, Runxiang, Wojciechowski, Andrea C., Luzwick, Jessica W., Layden, Hillary, Eichman, Brandt F., Thompson, Petria S., Mehta, Kavi P.M., Cortez, David

Journal:

Year:

2018

Language:

english

File:

PDF, 3.94 MB

english, 2018

42

[Methods in Enzymology] DNA Repair Enzymes: Cell, Molecular, and Chemical Biology Volume 591 || Preface

Eichman, Brandt F.

Year:

2017

Language:

english

File:

PDF, 36 KB

english, 2017

43

Emerging Roles of DNA Glycosylases and the Base Excision Repair Pathway

Mullins, Elwood A., Rodriguez, Alyssa A., Bradley, Noah P., Eichman, Brandt F.

Journal:

Trends in Biochemical Sciences

Year:

2019

Language:

english

File:

PDF, 3.46 MB

english, 2019

44

Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts

Steenwyk, Jacob L., Opulente, Dana A., Kominek, Jacek, Shen, Xing-Xing, Zhou, Xiaofan, Labella, Abigail L., Bradley, Noah P., Eichman, Brandt F., Čadež, Neža, Libkind, Diego, DeVirgilio, Jeremy, Hulfa

Journal:

Year:

2019

Language:

english

File:

PDF, 3.27 MB

english, 2019

45

Protection of abasic sites during DNA replication by a stable thiazolidine protein-DNA cross-link

Thompson, Petria S., Amidon, Katherine M., Mohni, Kareem N., Cortez, David, Eichman, Brandt F.

Journal:

Nature Structural and Molecular Biology

Year:

2019

Language:

english

File:

PDF, 3.71 MB

english, 2019

46

Structural biology of DNA abasic site protection by SRAP proteins

Amidon, Katherine M., Eichman, Brandt F.

Journal:

Year:

2020

File:

PDF, 2.43 MB

2020

47

An autoinhibitory role for the GRF zinc finger domain of DNA glycosylase NEIL3

Rodriguez, Alyssa A., Wojtaszek, Jessica L, Greer, Briana H., Haldar, Tuhin, Gates, Kent S., Williams, R. Scott, Eichman, Brandt F.

Journal:

Journal of Biological Chemistry

Year:

2020

File:

PDF, 1.02 MB

2020

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